Index
C
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R
C
cbAbout() (pyjamas.rcallbacks.rcbabout.RCBAbout method)
cbAdjustContrast() (pyjamas.rcallbacks.rcbimage.RCBImage method)
cbApplyClassifier() (pyjamas.rcallbacks.rcbclassifiers.RCBClassifiers method)
cbApplyTrackingClassifier() (pyjamas.rcallbacks.rcbclassifiers.RCBClassifiers method)
cbBatchFlatFieldCorrection() (pyjamas.rcallbacks.rcbbatchprocess.RCBBatchProcess method)
cbBatchProjectConcat() (pyjamas.rcallbacks.rcbbatchprocess.RCBBatchProcess method)
cbBatchResize() (pyjamas.rcallbacks.rcbbatchprocess.RCBBatchProcess method)
cbCentroidSeeds() (pyjamas.rcallbacks.rcbimage.RCBImage method)
cbChangeDisplayTheme() (pyjamas.rcallbacks.rcboptions.RCBOptions method)
cbCloseAllPolylines() (pyjamas.rcallbacks.rcboptions.RCBOptions method)
cbCopyPolyline() (pyjamas.rcallbacks.rcbannotations.RCBAnnotations method)
cbCreateLR() (pyjamas.rcallbacks.rcbclassifiers.RCBClassifiers method)
cbCreateReSCUNet() (pyjamas.rcallbacks.rcbclassifiers.RCBClassifiers method)
cbCreateSVM() (pyjamas.rcallbacks.rcbclassifiers.RCBClassifiers method)
cbCreateUNet() (pyjamas.rcallbacks.rcbclassifiers.RCBClassifiers method)
cbCrop() (pyjamas.rcallbacks.rcbimage.RCBImage method)
cbCropTracked() (pyjamas.rcallbacks.rcboptions.RCBOptions method)
cbDeleteAllAnn() (pyjamas.rcallbacks.rcbannotations.RCBAnnotations method)
cbDeleteAllFiducials() (pyjamas.rcallbacks.rcbannotations.RCBAnnotations method)
cbDeleteFiducialsInsidePoly() (pyjamas.rcallbacks.rcbannotations.RCBAnnotations method)
cbDeleteFiducialsOutsidePoly() (pyjamas.rcallbacks.rcbannotations.RCBAnnotations method)
cbDeleteSliceAnn() (pyjamas.rcallbacks.rcbannotations.RCBAnnotations method)
cbDeleteSliceFiducials() (pyjamas.rcallbacks.rcbannotations.RCBAnnotations method)
cbDeleteSlicePoly() (pyjamas.rcallbacks.rcbannotations.RCBAnnotations method)
cbDilateErodePolyline() (pyjamas.rcallbacks.rcbannotations.RCBAnnotations method)
cbDisplayFiducialIDs() (pyjamas.rcallbacks.rcboptions.RCBOptions method)
cbDisplayInfo() (pyjamas.rcallbacks.rcbimage.RCBImage method)
cbExpandNPropagateSeeds() (pyjamas.rcallbacks.rcbimage.RCBImage method)
cbExpandSeeds() (pyjamas.rcallbacks.rcbimage.RCBImage method)
cbExportAllPolylineAnnotations() (pyjamas.rcallbacks.rcbio.RCBIO method)
cbExportCurrentAnnotationsBinaryImage() (pyjamas.rcallbacks.rcbio.RCBIO method)
cbExportMovie() (pyjamas.rcallbacks.rcbio.RCBIO method)
cbExportPolylineAnnotations() (pyjamas.rcallbacks.rcbio.RCBIO method)
cbExportROIAndMasks() (pyjamas.rcallbacks.rcbio.RCBIO method)
cbExportSIESTAAnnotations() (pyjamas.rcallbacks.rcbio.RCBIO method)
cbFiducials() (pyjamas.rcallbacks.rcbannotations.RCBAnnotations method)
cbFindSeeds() (pyjamas.rcallbacks.rcbimage.RCBImage method)
cbFlipImage() (pyjamas.rcallbacks.rcbimage.RCBImage method)
cbFramesPerSec() (pyjamas.rcallbacks.rcboptions.RCBOptions method)
cbGaussianImage() (pyjamas.rcallbacks.rcbimage.RCBImage method)
cbGoTo() (pyjamas.rcallbacks.rcbimage.RCBImage method)
cbGradientImage() (pyjamas.rcallbacks.rcbimage.RCBImage method)
cbHideAnn() (pyjamas.rcallbacks.rcbannotations.RCBAnnotations method)
cbImportSIESTAAnnotations() (pyjamas.rcallbacks.rcbio.RCBIO method)
cbInflateBalloon() (pyjamas.rcallbacks.rcbannotations.RCBAnnotations method)
cbInstallPlugin() (pyjamas.rcallbacks.rcbplugins.RCBPlugins method)
cbInvertImage() (pyjamas.rcallbacks.rcbimage.RCBImage method)
cbKymograph() (pyjamas.rcallbacks.rcbimage.RCBImage method)
cbLiveWire() (pyjamas.rcallbacks.rcbannotations.RCBAnnotations method)
cbLoadAnnotations() (pyjamas.rcallbacks.rcbio.RCBIO method)
cbLoadArray() (pyjamas.rcallbacks.rcbio.RCBIO method)
cbLoadClassifier() (pyjamas.rcallbacks.rcbio.RCBIO method)
cbLoadPlugins() (pyjamas.rcallbacks.rcbplugins.RCBPlugins method)
cbLoadTimeSeries() (pyjamas.rcallbacks.rcbio.RCBIO method)
cbMeasureBatch() (pyjamas.rcallbacks.rcbbatchprocess.RCBBatchProcess method)
cbMeasurePoly() (pyjamas.rcallbacks.rcbmeasure.RCBMeasure method)
cbMovePolyline() (pyjamas.rcallbacks.rcbannotations.RCBAnnotations method)
cbNextFrame() (pyjamas.rcallbacks.rcbimage.RCBImage method)
cbNoAnn() (pyjamas.rcallbacks.rcbannotations.RCBAnnotations method)
cbNonMaxSuppression() (pyjamas.rcallbacks.rcbclassifiers.RCBClassifiers method)
cbOrthogonalViews() (pyjamas.rcallbacks.rcbimage.RCBImage method)
cbPastePolyline() (pyjamas.rcallbacks.rcbannotations.RCBAnnotations method)
cbPlay() (pyjamas.rcallbacks.rcbimage.RCBImage method)
cbPolylines() (pyjamas.rcallbacks.rcbannotations.RCBAnnotations method)
cbPrevFrame() (pyjamas.rcallbacks.rcbimage.RCBImage method)
cbProjectImage() (pyjamas.rcallbacks.rcbimage.RCBImage method)
cbPropagateBalloons() (pyjamas.rcallbacks.rcbimage.RCBImage method)
cbPropagateSeeds() (pyjamas.rcallbacks.rcbimage.RCBImage method)
cbRectangles() (pyjamas.rcallbacks.rcbannotations.RCBAnnotations method)
cbRegisterImage() (pyjamas.rcallbacks.rcbimage.RCBImage method)
cbRescaleImage() (pyjamas.rcallbacks.rcbimage.RCBImage method)
cbRotateImage() (pyjamas.rcallbacks.rcbimage.RCBImage method)
cbSaveAnnotations() (pyjamas.rcallbacks.rcbio.RCBIO method)
cbSaveClassifier() (pyjamas.rcallbacks.rcbio.RCBIO method)
cbSaveDisplay() (pyjamas.rcallbacks.rcbio.RCBIO method)
cbSaveROI() (pyjamas.rcallbacks.rcbio.RCBIO method)
cbSaveTimeSeries() (pyjamas.rcallbacks.rcbio.RCBIO method)
cbSegmentDetectedObjects() (pyjamas.rcallbacks.rcbimage.RCBImage method)
cbSetBrushSize() (pyjamas.rcallbacks.rcboptions.RCBOptions method)
cbSetCWD() (pyjamas.rcallbacks.rcboptions.RCBOptions method)
cbSetImageProcessingCropSize() (pyjamas.rcallbacks.rcboptions.RCBOptions method)
cbSetLivewireShortestPathFunction() (pyjamas.rcallbacks.rcboptions.RCBOptions method)
cbSetLiveWireSmoothGaussian() (pyjamas.rcallbacks.rcboptions.RCBOptions method)
cbSetMarginSize() (pyjamas.rcallbacks.rcboptions.RCBOptions method)
cbTimeSlider() (pyjamas.rcallbacks.rcbimage.RCBImage method)
cbTrackFiducials() (pyjamas.rcallbacks.rcbannotations.RCBAnnotations method)
cbUndo() (pyjamas.rcallbacks.rcboptions.RCBOptions method)
cbZoom() (pyjamas.rcallbacks.rcbimage.RCBImage method)
R
RCBAbout (class in pyjamas.rcallbacks.rcbabout)
RCBAnnotations (class in pyjamas.rcallbacks.rcbannotations)
RCBBatchProcess (class in pyjamas.rcallbacks.rcbbatchprocess)
RCBClassifiers (class in pyjamas.rcallbacks.rcbclassifiers)
RCBImage (class in pyjamas.rcallbacks.rcbimage)
RCBIO (class in pyjamas.rcallbacks.rcbio)
RCBMeasure (class in pyjamas.rcallbacks.rcbmeasure)
RCBOptions (class in pyjamas.rcallbacks.rcboptions)
RCBPlugins (class in pyjamas.rcallbacks.rcbplugins)
PyJAMAS
Navigation
Contents:
Installation
Handling images
Image annotation
Image transformations
Watershed-based image segmentation
Balloon-based image segmentation
Object segmentation using linear classifiers
Object segmentation using deep neural networks
Measuring images
Using plugins
Sample plugin
A more complex plugin
The PyJAMAS API
Citing PyJAMAS
Sponsors
Related Topics
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